powered by ESZ_lab (University of Siena)

EZmito is a bioinformatic tool for phylogenetic data preparation and nucleotide composition analysis of mitogenomes.

(version 2021.11, November 2021)

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Citations

For publication of results, please cite:

• Cucini C., Leo C., Iannotti N., Boschi S., Brunetti C., Pons J., Fanciulli P. P., Frati F., Carapelli A., Nardi F. (2021) EZmito: a simple and fast tool for multiple mitogenome analyses, Mitochondrial DNA Part B, 6(3), 1101-1109. Doi: 10.1080/23802359.2021.1899865

If you used Ezpipe, please also cite:

• Wernersson, R., & Pedersen, A. G. (2003). RevTrans: multiple alignment of coding DNA from aligned amino acid sequences. Nucleic acids research, 31(13), 3537-3539. Doi: 10.1093/nar/gkg609
• Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular biology and evolution, 17(4), 540-552. Doi: 10.1093/oxfordjournals.molbev.a026334

If you used Ezskew, please also cite:

• Hassanin, A., Leger, N. E. L. L. Y., & Deutsch, J. (2005). Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of Metazoa, and consequences for phylogenetic inferences. Systematic biology, 54(2), 277-298.Doi: 10.1080/10635150590947843

If you used Ezcodon, please also cite:

• Lee, B. D. (2018). Python implementation of codon adaptation index. Journal of Open Source Software, 3(30), 905. Doi: 10.21105/joss.00905

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Acknowledgements

We wish to thank non-published softwares useful for Ezmito development:

• Bootstrap
• Seqmagick
• Chopper package